Table 1 Conserved motifs that were used for determination of the repeatome components in ON library
Repeatome family | Component | Component’s part | motif |
|---|---|---|---|
satDNA | HintCl-18 | CATGCCATAACAC | |
Halp-aLTR-1 | TCAGGCCATTCCGG | ||
Halp-aLTR-2 | ATCACAGTCATATA | ||
linker | ATGATCCTGTTACC | ||
Ty3-Gypsy retrotransposons | Tekay | RT | ATGGACCTCATGAA |
GAG | GCCCCAGGAGTGAA | ||
PROT | ATGGCAAATGGTAG | ||
5’ of LTR | GATGTGACAACCGG | ||
3’ of LTR | TGGTTTGGGGGTGT | ||
CRM | RT | AGCCCTTGTGCTGT | |
GAG | ATGGGAAGAGACGG | ||
PROT | AACGTTGCGAGTTC | ||
5’ of LTR | AATTGAAGCCCAAG | ||
3’ of LTR | ATCGGGCAAAACGT | ||
Athila | RT | GCCCCTACGGAACA | |
GAG | GCATACGGACCTGG | ||
PROT | CTGCAGGAAACACA | ||
5’ of LTR | TGATATCGCGCAAT | ||
3’ of LTR | TAATTAGGTAATTT | ||
Ty1-Copia retrotransposons | SIRE | RT | AGCGCAGGATGTCA |
GAG | CGACATGAACAAAA | ||
RVE | GCGTCCTCAGACAC | ||
RVT2 | TGACTGAGCATTTG | ||
5’ of LTR | TGTTGGAATTATAT | ||
3’ of LTR | TTATATATAAACTA | ||
Angela | RT | ATCTGGATGCAACA | |
GAG (1) | GCTATGTTATGGCAT | ||
GAG (2) | GTTACTTGTCTGCT | ||
RVE | TGGGTATTCTTTCT | ||
5’ of LTR | ACCCTGAAATGATG | ||
3’ of LTR | AGAGGTGTTTAGGT |